=>> Building science/py-molmod build started at Sun May 4 10:03:48 EDT 2025 port directory: /usr/ports/science/py-molmod package name: py311-molmod-1.4.8_2 building for: FreeBSD 13amd64-weekly-desktop-job-02 13.4-RELEASE-p4 FreeBSD 13.4-RELEASE-p4 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 770 Mar 20 01:41 /usr/ports/science/py-molmod/Makefile Ports top last git commit: 57a50b106b87 Ports top unclean checkout: yes Port dir last git commit: 06a08e69f3ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1304000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1304000 UNAME_v=FreeBSD 13.4-RELEASE-p4 UNAME_r=13.4-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/mnt/data/.m/13amd64-weekly-desktop/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/mnt/data/.m/13amd64-weekly-desktop/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13amd64-weekly-desktop SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/mnt/data/.m/13amd64-weekly-desktop/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-molmod/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-molmod/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-molmod/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-molmod/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molmod" EXAMPLESDIR="share/examples/molmod" DATADIR="share/molmod" WWWDIR="www/molmod" ETCDIR="etc/molmod" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/molmod DOCSDIR=/usr/local/share/doc/molmod EXAMPLESDIR=/usr/local/share/examples/molmod WWWDIR=/usr/local/www/molmod ETCDIR=/usr/local/etc/molmod --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Work around some weirdness when fetching golang modules GO_TAGS+=netcgo .if ${.CURDIR:M*/www/chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/www/ungoogled-chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/lang/rust*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/lang/gcc*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/www/iridium*} MAKE_JOBS_NUMBER=16 .endif .if ${.CURDIR:M*/devel/electron*} MAKE_JOBS_NUMBER=20 .endif .if ${.CURDIR:M*/databases/mongodb*} MAKE_JOBS_NUMBER=12 .endif .if ${.CURDIR:M*/devel/llvm*} MAKE_JOBS_NUMBER=16 .endif # Speed things up a bit MAKE_JOBS_NUMBER?=8 #### #### #MAKE_JOBS_NUMBER?=4 # Alows us to build ports non-interactivly DISABLE_LICENSES=yes LICENSES_ACCEPTED+= DCC # Enable SNDIO on anything that supports it #OPTIONS_SET+=PULSEAUDIO OPTIONS_SET+=SNDIO # Yes we have MS Windows x11-fonts_webfonts_SET+=EXTRAFONTS CLEARTYPE # Desktop Specific Options sysutils_gksu_UNSET+=NAUTILUS x11-wm_compiz-fusion_UNSET+=EMERALD accessibility_redshift_SET+=GUI VIDMODE # These ports default to other audio servers, audio_espeak_UNSET+=PORTAUDIO www_qt5-webengine_UNSET+=ALSA www_qt6-webengine_UNSET+=ALSA audio_rhvoice_UNSET+=AO comms_morse_UNSET+=OSS audio_harp_UNSET+=OSS # Somehow these options are being set and result in ports being rebuilt needlessly becuase they are actually turned off audio_alsa-plugins_SET+=FFMPEG JACK PULSEAUDIO SAMPLERATE SPEEX #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-molmod-1.4.8_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.0.6.pkg [13amd64-weekly-desktop-job-02] Installing pkg-2.0.6... [13amd64-weekly-desktop-job-02] Extracting pkg-2.0.6: .......... done ===> py311-molmod-1.4.8_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-molmod-1.4.8_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-molmod-1.4.8_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-molmod-1.4.8_2 for building => SHA256 Checksum OK for molmod-1.4.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Fetching all distfiles required by py311-molmod-1.4.8_2 for building ===> Extracting for py311-molmod-1.4.8_2 => SHA256 Checksum OK for molmod-1.4.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-molmod-1.4.8_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-molmod-1.4.8_2 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg [13amd64-weekly-desktop-job-02] Installing py311-numpy-1.26.4_6,1... [13amd64-weekly-desktop-job-02] `-- Installing gcc13-13.3.0_2... [13amd64-weekly-desktop-job-02] | `-- Installing binutils-2.44,1... [13amd64-weekly-desktop-job-02] | | `-- Installing indexinfo-0.3.1_1... [13amd64-weekly-desktop-job-02] | | `-- Extracting indexinfo-0.3.1_1: . done [13amd64-weekly-desktop-job-02] | | `-- Installing zstd-1.5.7... [13amd64-weekly-desktop-job-02] | | `-- Installing liblz4-1.10.0,1... [13amd64-weekly-desktop-job-02] | | `-- Extracting liblz4-1.10.0,1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting zstd-1.5.7: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting binutils-2.44,1: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing gmp-6.3.0... [13amd64-weekly-desktop-job-02] | `-- Extracting gmp-6.3.0: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing mpc-1.3.1_1... [13amd64-weekly-desktop-job-02] | | `-- Installing mpfr-4.2.1,1... [13amd64-weekly-desktop-job-02] | | `-- Extracting mpfr-4.2.1,1: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting mpc-1.3.1_1: ...... done [13amd64-weekly-desktop-job-02] `-- Extracting gcc13-13.3.0_2: .......... done [13amd64-weekly-desktop-job-02] `-- Installing openblas-0.3.29_1,2... [13amd64-weekly-desktop-job-02] `-- Extracting openblas-0.3.29_1,2: .......... done [13amd64-weekly-desktop-job-02] `-- Installing python311-3.11.11... [13amd64-weekly-desktop-job-02] | `-- Installing gettext-runtime-0.23.1... [13amd64-weekly-desktop-job-02] | `-- Extracting gettext-runtime-0.23.1: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing libffi-3.4.6... [13amd64-weekly-desktop-job-02] | `-- Extracting libffi-3.4.6: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing mpdecimal-4.0.0... [13amd64-weekly-desktop-job-02] | `-- Extracting mpdecimal-4.0.0: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing readline-8.2.13_2... [13amd64-weekly-desktop-job-02] | `-- Extracting readline-8.2.13_2: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting python311-3.11.11: .......... done [13amd64-weekly-desktop-job-02] `-- Installing suitesparse-umfpack-6.3.5_1... [13amd64-weekly-desktop-job-02] | `-- Installing suitesparse-amd-3.3.3... [13amd64-weekly-desktop-job-02] | | `-- Installing suitesparse-config-7.10.1... [13amd64-weekly-desktop-job-02] | | `-- Extracting suitesparse-config-7.10.1: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting suitesparse-amd-3.3.3: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing suitesparse-camd-3.3.3... [13amd64-weekly-desktop-job-02] | `-- Extracting suitesparse-camd-3.3.3: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing suitesparse-ccolamd-3.3.4... [13amd64-weekly-desktop-job-02] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing suitesparse-cholmod-5.3.1... [13amd64-weekly-desktop-job-02] | | `-- Installing suitesparse-colamd-3.3.4... [13amd64-weekly-desktop-job-02] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting suitesparse-cholmod-5.3.1: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done [13amd64-weekly-desktop-job-02] Extracting py311-numpy-1.26.4_6,1: .......... done ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.11: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-molmod-1.4.8_2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-molmod-1.4.8_2 ===> py311-molmod-1.4.8_2 depends on executable: cython-3.11 - not found ===> Installing existing package /packages/All/py311-cython-0.29.37_2.pkg [13amd64-weekly-desktop-job-02] Installing py311-cython-0.29.37_2... [13amd64-weekly-desktop-job-02] Extracting py311-cython-0.29.37_2: .......... done ===> py311-molmod-1.4.8_2 depends on executable: cython-3.11 - found ===> Returning to build of py311-molmod-1.4.8_2 ===> py311-molmod-1.4.8_2 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_2.pkg [13amd64-weekly-desktop-job-02] Installing py311-setuptools-63.1.0_2... [13amd64-weekly-desktop-job-02] Extracting py311-setuptools-63.1.0_2: .......... done ===> py311-molmod-1.4.8_2 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-molmod-1.4.8_2 ===> py311-molmod-1.4.8_2 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-molmod-1.4.8_2 Trying to get the version from git describe Trying to get the version from {} molmod/version.py Version according to molmod/version.py: 1.4.8 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-molmod-1.4.8_2 Trying to get the version from git describe Trying to get the version from {} molmod/version.py Version according to molmod/version.py: 1.4.8 running build running build_py creating build creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311 creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/symmetry.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/vectors.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/unit_cells.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/randomize.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/quaternions.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/__init__.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/log.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/periodic.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/binning.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/clusters.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/version.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/molecular_graphs.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/similarity.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/zmatrix.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/transformations.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/graphs.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/isotopes.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/constants.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/pairff.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/utils.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/bonds.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/toyff.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/minimizer.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/ic.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/molecules.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/units.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_data.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_clusters.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_transformations.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_zmatrix.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_symmetry.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_minimizer.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_randomize.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_molecular_graphs.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/common.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/__init__.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_log.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_utils.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_pairff.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_examples.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_unit_cells.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_ic.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_units.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_quaternions.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_binning.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_similarity.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_vectors.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_molecules.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_graphs.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test copying molmod/test/test_toyff.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/lammps.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/chk.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/common.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/__init__.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/cml.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/number_state.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/cp2k.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/atrj.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/psf.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/cpmd.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/fchk.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/pdb.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/crystal.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/sdf.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/dlpoly.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/cube.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/gromacs.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/xyz.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io copying molmod/io/gamess.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_dlpoly.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cp2k.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cml.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/__init__.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_number_state.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cpmd.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cube.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_gamess.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_xyz.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_atrj.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_psf.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_crystal.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_pdb.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_lammps.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_chk.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_sdf.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_fchk.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_gromacs.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test running egg_info writing molmod.egg-info/PKG-INFO writing dependency_links to molmod.egg-info/dependency_links.txt writing requirements to molmod.egg-info/requires.txt writing top-level names to molmod.egg-info/top_level.txt reading manifest file 'molmod.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'ext.c' found under directory 'molmod' adding license file 'LICENSE.txt' writing manifest file 'molmod.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'molmod.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'molmod.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'molmod.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'molmod.data.test' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data.test' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'molmod.data.test' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'molmod.data.test' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'molmod.examples' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'molmod.examples' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'molmod.examples' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'molmod.examples' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying molmod/common.c -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/common.h -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/ext.pyx -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/ff.c -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/ff.h -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/ff.pxd -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/graphs.c -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/graphs.h -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/graphs.pxd -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/molecules.c -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/molecules.h -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/molecules.pxd -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/similarity.c -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/similarity.h -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/similarity.pxd -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/unit_cells.c -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/unit_cells.h -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod copying molmod/unit_cells.pxd -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data copying molmod/data/bonds.csv -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data copying molmod/data/bonds.ods -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data copying molmod/data/mass.mas03 -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data copying molmod/data/nubtab03.asc -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data copying molmod/data/periodic.csv -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data copying molmod/data/periodic.ods -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data copying molmod/data/toyff_angles.txt -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/1LJL_Cys10.cml -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/5ringOH.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/CID_22898828.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/PCGamess_PUNCH -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_31646545.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_31646548.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_40363570.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_40363571.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_41893278.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_41893280.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_54258192.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_55127927.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_55488598.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_56274343.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/alanine.cube -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/argon.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/bartek.atrj -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/benzene.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/butane.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/caplayer.cml -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/crystal_api.out -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/cyclopentane.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/dinitrogen.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/dlpoly_HISTORY -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/dlpoly_OUTPUT -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/dopamine.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/ethane.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/ethene.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/example.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/formol.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/funny.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/il2.pdb -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/lammps_dump.txt -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/lau.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/octane.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/oh3siozroh3.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_5ring10T.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_5ring12T.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_6_6ring.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_6ring.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/pentapeptide.psf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/precursor.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/probes.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/tea.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/tetra.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf.psf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf_64.cell -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf_single.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/tpa.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/water.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/water2.gro -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/water_md.inp -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test copying molmod/data/test/zr4o8-3.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/a_reaction.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/b_chbond.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/c_h2rot.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/000_units creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/a_convert.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/b_com.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/c_carbon.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/d_size.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/e_shape.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/a_graphs.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/c_distances.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates creating build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/propane.xyz -> build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns running build_ext cythoning molmod/ext.pyx to molmod/ext.c /usr/local/lib/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/science/py-molmod/work-py311/molmod-1.4.8/molmod/ext.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'molmod.ext' extension creating build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311 creating build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/common.c -o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/common.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/ext.c -o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ext.o In file included from molmod/ext.c:752: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^ molmod/ext.c:3089:40: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 3089 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); | ~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:3095:40: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 3095 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); | ~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:3129:40: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 3129 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); | ~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:3135:40: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 3135 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); | ~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:3845:42: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 3845 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); | ~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:3877:40: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 3877 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); | ~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:3883:40: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 3883 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); | ~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:4749:44: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 4749 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:5493:44: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 5493 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ molmod/ext.c:6024:39: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 6024 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); | ~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~ molmod/ext.c:6866:38: warning: passing 'const long *' to parameter of type 'long *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] 6866 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ molmod/similarity.h:30:46: note: passing argument to parameter 'labels' here 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); | ^ molmod/ext.c:7095:41: warning: passing 'const double *' to parameter of type 'double *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] 7095 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ molmod/similarity.h:31:51: note: passing argument to parameter 'distance_matrix' here 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); | ^ molmod/ext.c:6997:52: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 6997 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~ molmod/ext.c:7351:47: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 7351 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ molmod/ext.c:7415:47: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 7415 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ molmod/ext.c:26627:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] 26627 | CYTHON_FALLTHROUGH; | ^ molmod/ext.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH' 345 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) | ^ molmod/ext.c:26638:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] 26638 | CYTHON_FALLTHROUGH; | ^ molmod/ext.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH' 345 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) | ^ 18 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/ff.c -o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ff.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/graphs.c -o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/graphs.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/molecules.c -o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/molecules.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/similarity.c -o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/similarity.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/unit_cells.c -o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/unit_cells.o molmod/unit_cells.c:114:21: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^ molmod/unit_cells.c:114:21: note: use function 'labs' instead 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^~~ | labs molmod/unit_cells.c:114:31: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^ molmod/unit_cells.c:114:31: note: use function 'labs' instead 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^~~ | labs molmod/unit_cells.c:114:41: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^ molmod/unit_cells.c:114:41: note: use function 'labs' instead 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^~~ | labs molmod/unit_cells.c:156:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^ molmod/unit_cells.c:156:20: note: use function 'fabs' instead 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^~~ | fabs molmod/unit_cells.c:156:54: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^ molmod/unit_cells.c:156:54: note: use function 'fabs' instead 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^~~ | fabs molmod/unit_cells.c:156:88: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^ molmod/unit_cells.c:156:88: note: use function 'fabs' instead 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^~~ | fabs 6 warnings generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/common.o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ext.o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ff.o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/graphs.o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/molecules.o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/similarity.o build/temp.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/unit_cells.o -L/usr/local/lib -o build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ext.cpython-311.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-molmod-1.4.8_2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-molmod-1.4.8_2 depends on package: py311-future>0 - not found ===> Installing existing package /packages/All/py311-future-0.18.3_1.pkg [13amd64-weekly-desktop-job-02] Installing py311-future-0.18.3_1... [13amd64-weekly-desktop-job-02] Extracting py311-future-0.18.3_1: .......... done ===> py311-molmod-1.4.8_2 depends on package: py311-future>0 - found ===> Returning to build of py311-molmod-1.4.8_2 ===> py311-molmod-1.4.8_2 depends on executable: cython-3.11 - found ===> py311-molmod-1.4.8_2 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-molmod-1.4.8_2 ===> Generating temporary packing list Trying to get the version from git describe Trying to get the version from {} molmod/version.py Version according to molmod/version.py: 1.4.8 running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing molmod.egg-info/PKG-INFO writing dependency_links to molmod.egg-info/dependency_links.txt writing requirements to molmod.egg-info/requires.txt writing top-level names to molmod.egg-info/top_level.txt reading manifest file 'molmod.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'molmod.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'molmod.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'molmod.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'molmod.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'molmod.data.test' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data.test' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'molmod.data.test' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'molmod.data.test' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'molmod.examples' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'molmod.examples' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'molmod.examples' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'molmod.examples' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext skipping 'molmod/ext.c' Cython extension (up-to-date) running install_lib creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/similarity.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/symmetry.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ff.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/vectors.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/unit_cells.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/similarity.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/similarity.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/randomize.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ext.pyx -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/quaternions.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/log.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/periodic.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/binning.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/clusters.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs/b_neighbors.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs/d_symmetries.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs/a_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs/ethanol.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs/c_distances.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/002_graphs/caffeine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules/a_convert.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules/d_size.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules/b_com.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules/ibuprofen.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules/c_carbon.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/001_molecules/e_shape.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates/dopamine.fchk -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates/b_bending_angles.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates/dopamine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates/a_bond_length.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/003_internal_coordinates/propane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns/dopamine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns/propane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns/mfi_fragment.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns/b_dopamine_types.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/004_patterns/a_propane_types.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/000_units/b_chbond.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/000_units/c_h2rot.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/examples/000_units/a_reaction.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/version.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/molecular_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/similarity.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/common.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/common.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/graphs.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/graphs.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/zmatrix.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/transformations.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/unit_cells.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/unit_cells.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/isotopes.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ext.cpython-311.so -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/lammps.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/chk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/common.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/cml.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/number_state.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/cp2k.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/atrj.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/psf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/cpmd.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/fchk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/pdb.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/crystal.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/sdf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/dlpoly.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/cube.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_dlpoly.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_cp2k.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_cml.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_number_state.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_cpmd.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_cube.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_gamess.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_xyz.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_atrj.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_psf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_crystal.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_pdb.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_lammps.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_chk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_sdf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_fchk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/test/test_gromacs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/gromacs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/xyz.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/io/gamess.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/constants.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/molecules.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/graphs.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/pairff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/nubtab03.asc -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/periodic.csv -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/toyff_angles.txt -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/bonds.csv -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/bonds.ods -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_55127927.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/zr4o8-3.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/tea.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/tetra.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/butane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/funny.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/1TOH.b3lyp.fchk -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_31646548.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_40363571.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_31646545.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/example.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/opt_5ring10T.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/il2.pdb -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/opt_6ring.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_56274343.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/1TOH.b3lyp.trim.fchk -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/caplayer.cml -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/alanine.cube -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_41893278.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/water2.gro -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/1LJL_Cys10.cml -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/5ringOH.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/precursor.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/dlpoly_OUTPUT -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/argon.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/thf_single.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/dinitrogen.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/benzene.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/thf.psf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/tpa.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/octane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/oh3siozroh3.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/opt_6_6ring.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/bartek.atrj -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/formol.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/water.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_54258192.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/thf.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_55488598.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/lammps_dump.txt -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/dlpoly_HISTORY -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/TRAJECTORY_H2_CPMD -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/lau.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/dlpoly_HISTORY_an2 -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/dopamine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/water_md.inp -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/ethene.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/PCGamess_PUNCH -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_41893280.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/opt_5ring12T.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/thf_64.cell -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/crystal_api.out -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/probes.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/ethane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/pentapeptide.psf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/SID_40363570.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/h3zrosihohosioh3.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/ethene_ethyl_trans.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/cyclopentane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/test/CID_22898828.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/mass.mas03 -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/data/periodic.ods -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/utils.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/bonds.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/toyff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_data.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_clusters.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_transformations.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_zmatrix.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_symmetry.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_minimizer.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_randomize.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_molecular_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/common.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_log.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_utils.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_pairff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_examples.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_unit_cells.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_ic.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_units.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_quaternions.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_binning.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_similarity.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_vectors.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_molecules.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/test/test_toyff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/minimizer.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ic.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/molecules.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/unit_cells.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/molecules.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/molecules.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/units.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ff.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-13.4-RELEASE-p4-amd64-cpython-311/molmod/ff.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/symmetry.py to symmetry.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/vectors.py to vectors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/unit_cells.py to unit_cells.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/randomize.py to randomize.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/quaternions.py to quaternions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/log.py to log.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/periodic.py to periodic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/binning.py to binning.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/clusters.py to clusters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/b_neighbors.py to b_neighbors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/d_symmetries.py to d_symmetries.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/a_graphs.py to a_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/c_distances.py to c_distances.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/a_convert.py to a_convert.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/d_size.py to d_size.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/b_com.py to b_com.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/c_carbon.py to c_carbon.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/e_shape.py to e_shape.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/b_bending_angles.py to b_bending_angles.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/c_ff_hessian.py to c_ff_hessian.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/d_dft_hessian.py to d_dft_hessian.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/a_bond_length.py to a_bond_length.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns/b_dopamine_types.py to b_dopamine_types.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns/a_propane_types.py to a_propane_types.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units/b_chbond.py to b_chbond.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units/c_h2rot.py to c_h2rot.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units/a_reaction.py to a_reaction.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/version.py to version.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/molecular_graphs.py to molecular_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/similarity.py to similarity.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/zmatrix.py to zmatrix.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/transformations.py to transformations.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/graphs.py to graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/isotopes.py to isotopes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/lammps.py to lammps.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/chk.py to chk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/common.py to common.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cml.py to cml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/number_state.py to number_state.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cp2k.py to cp2k.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/atrj.py to atrj.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/psf.py to psf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cpmd.py to cpmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/fchk.py to fchk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/pdb.py to pdb.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/crystal.py to crystal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/sdf.py to sdf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/dlpoly.py to dlpoly.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cube.py to cube.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_dlpoly.py to test_dlpoly.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cp2k.py to test_cp2k.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cml.py to test_cml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_number_state.py to test_number_state.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cpmd.py to test_cpmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cube.py to test_cube.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_gamess.py to test_gamess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_xyz.py to test_xyz.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_atrj.py to test_atrj.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_psf.py to test_psf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_crystal.py to test_crystal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_pdb.py to test_pdb.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_lammps.py to test_lammps.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_chk.py to test_chk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_sdf.py to test_sdf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_fchk.py to test_fchk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_gromacs.py to test_gromacs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/gromacs.py to gromacs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/xyz.py to xyz.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/gamess.py to gamess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/constants.py to constants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/pairff.py to pairff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/bonds.py to bonds.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/toyff.py to toyff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_data.py to test_data.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_clusters.py to test_clusters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_transformations.py to test_transformations.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_zmatrix.py to test_zmatrix.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_symmetry.py to test_symmetry.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_minimizer.py to test_minimizer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_randomize.py to test_randomize.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_molecular_graphs.py to test_molecular_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/common.py to common.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_log.py to test_log.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_utils.py to test_utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_pairff.py to test_pairff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_examples.py to test_examples.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_unit_cells.py to test_unit_cells.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_ic.py to test_ic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_units.py to test_units.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_quaternions.py to test_quaternions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_binning.py to test_binning.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_similarity.py to test_similarity.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_vectors.py to test_vectors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_molecules.py to test_molecules.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_graphs.py to test_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_toyff.py to test_toyff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/minimizer.py to minimizer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/ic.py to ic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/molecules.py to molecules.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/units.py to units.cpython-311.pyc writing byte-compilation script '/tmp/tmpu7a6q_s_.py' /usr/local/bin/python3.11 /tmp/tmpu7a6q_s_.py removing /tmp/tmpu7a6q_s_.py running install_egg_info Copying molmod.egg-info to /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod-1.4.8-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/science/py-molmod/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-04T14:03:48+0000' 'PKG_NOTE_ports_top_git_hash=57a50b106b87' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=06a08e69f3ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-molmod-1.4.8_2 ===> Building py311-molmod-1.4.8_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-molmod-1.4.8_2 build of science/py-molmod@py311 | py311-molmod-1.4.8_2 ended at Sun May 4 10:04:16 EDT 2025 build time: 00:00:30