=>> Building biology/ngs-sdk build started at Sun May 4 08:03:04 EDT 2025 port directory: /usr/ports/biology/ngs-sdk package name: ngs-sdk-3.0.1 building for: FreeBSD 13amd64-weekly-desktop-job-02 13.4-RELEASE-p4 FreeBSD 13.4-RELEASE-p4 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1650 Feb 24 2024 /usr/ports/biology/ngs-sdk/Makefile Ports top last git commit: 57a50b106b87 Ports top unclean checkout: yes Port dir last git commit: 67dfb32b6e2b Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1304000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1304000 UNAME_v=FreeBSD 13.4-RELEASE-p4 UNAME_r=13.4-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/mnt/data/.m/13amd64-weekly-desktop/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/mnt/data/.m/13amd64-weekly-desktop/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13amd64-weekly-desktop SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/mnt/data/.m/13amd64-weekly-desktop/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ngs" EXAMPLESDIR="share/examples/ngs" DATADIR="share/ngs" WWWDIR="www/ngs" ETCDIR="etc/ngs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Work around some weirdness when fetching golang modules GO_TAGS+=netcgo .if ${.CURDIR:M*/www/chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/www/ungoogled-chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/lang/rust*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/lang/gcc*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/www/iridium*} MAKE_JOBS_NUMBER=16 .endif .if ${.CURDIR:M*/devel/electron*} MAKE_JOBS_NUMBER=20 .endif .if ${.CURDIR:M*/databases/mongodb*} MAKE_JOBS_NUMBER=12 .endif .if ${.CURDIR:M*/devel/llvm*} MAKE_JOBS_NUMBER=16 .endif # Speed things up a bit MAKE_JOBS_NUMBER?=8 #### #### #MAKE_JOBS_NUMBER?=4 # Alows us to build ports non-interactivly DISABLE_LICENSES=yes LICENSES_ACCEPTED+= DCC # Enable SNDIO on anything that supports it #OPTIONS_SET+=PULSEAUDIO OPTIONS_SET+=SNDIO # Yes we have MS Windows x11-fonts_webfonts_SET+=EXTRAFONTS CLEARTYPE # Desktop Specific Options sysutils_gksu_UNSET+=NAUTILUS x11-wm_compiz-fusion_UNSET+=EMERALD accessibility_redshift_SET+=GUI VIDMODE # These ports default to other audio servers, audio_espeak_UNSET+=PORTAUDIO www_qt5-webengine_UNSET+=ALSA www_qt6-webengine_UNSET+=ALSA audio_rhvoice_UNSET+=AO comms_morse_UNSET+=OSS audio_harp_UNSET+=OSS # Somehow these options are being set and result in ports being rebuilt needlessly becuase they are actually turned off audio_alsa-plugins_SET+=FFMPEG JACK PULSEAUDIO SAMPLERATE SPEEX #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.0.6.pkg [13amd64-weekly-desktop-job-02] Installing pkg-2.0.6... [13amd64-weekly-desktop-job-02] Extracting pkg-2.0.6: .......... done ===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ngs-sdk-3.0.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building => SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building ===> Extracting for ngs-sdk-3.0.1 => SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for ngs-sdk-3.0.1 ===> Applying FreeBSD patches for ngs-sdk-3.0.1 from /usr/ports/biology/ngs-sdk/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ngs-sdk-3.0.1 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [13amd64-weekly-desktop-job-02] Installing gmake-4.4.1... [13amd64-weekly-desktop-job-02] `-- Installing gettext-runtime-0.23.1... [13amd64-weekly-desktop-job-02] | `-- Installing indexinfo-0.3.1_1... [13amd64-weekly-desktop-job-02] | `-- Extracting indexinfo-0.3.1_1: . done [13amd64-weekly-desktop-job-02] `-- Extracting gettext-runtime-0.23.1: .......... done [13amd64-weekly-desktop-job-02] Extracting gmake-4.4.1: .......... done ===> ngs-sdk-3.0.1 depends on package: gmake>=4.4.1 - found ===> Returning to build of ngs-sdk-3.0.1 ===> ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - not found ===> Installing existing package /packages/All/perl5-5.36.3_2.pkg [13amd64-weekly-desktop-job-02] Installing perl5-5.36.3_2... [13amd64-weekly-desktop-job-02] Extracting perl5-5.36.3_2: .......... done ===> ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - found ===> Returning to build of ngs-sdk-3.0.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for ngs-sdk-3.0.1 CONFIGURING ngs-sdk Configuring NGS-SDK package checking system type... FreeBSD checking machine architecture... amd64 checking for supported architecture... amd64 (64 bits) is supported checking for supported OS... FreeBSD (FreeBSD) is supported checking for supported tool chain... clang tool chain is supported checking for clang... FreeBSD clang version 18.1.6 (https://github.com/llvm/llvm-project.git llvmorg-18.1.6-0-g1118c2e05e67) checking for clang++... yes checking for Python 3... skipped configure: creating 'Makefile.config.FreeBSD.amd64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk build output path: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel includedir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include bindir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/bin libdir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib sharedir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/share CC = clang -c CPP = clang++ configured with: "'--prefix=/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local' '--build-prefix=/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build'" CONFIGURING ngs-java Configuring NGS-JAVA package checking system type... FreeBSD checking machine architecture... amd64 configure: error: unsupported architecture 'FreeBSD':'amd64' CONFIGURING ngs-python Configuring NGS-PYTHON package checking system type... FreeBSD checking machine architecture... amd64 configure: error: unsupported architecture 'FreeBSD':'amd64' =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for ngs-sdk-3.0.1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python' mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++ clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++clang++clang++: : : warning: warning: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: clang++argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] : warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++clang++: warning: : warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD : warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a.2.11.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrorMsg.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrBlock.pic.o rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a.2 ln -s libngs-adapt-c++.a.2.11.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a.2 rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a ln -s libngs-adapt-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++-static.a ln -s libngs-adapt-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++-static.a gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter' clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadCollection.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceSequence.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Reference.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Pileup.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEventIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEvent.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/AlignmentIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Alignment.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroupIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroup.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Read.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/FragmentIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Fragment.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Statistics.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/StringRef.pic.o gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++' ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-java.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_Package.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_String.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ErrorMsg.pic.o gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java' ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-disp.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/VTable.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrBlock.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrorMsg.pic.o gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch' ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-python.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PackageItf.pic.o 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/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_StringItf.pic.o gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-c++ rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-disp mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-disp mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-c++ rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-java ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-c++; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-c++.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-3.0.1\/build\/ngs-sdk\/FreeBSD\/clang\/amd64\/rel\/obj\/ngs-bind-c++\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-c++/manifest ) mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-java ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-disp; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-disp.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-3.0.1\/build\/ngs-sdk\/FreeBSD\/clang\/amd64\/rel\/obj\/ngs-disp\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-disp/manifest ) ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-java; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-java.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-3.0.1\/build\/ngs-sdk\/FreeBSD\/clang\/amd64\/rel\/obj\/ngs-bind-java\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-java/manifest ) rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-python mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-python ( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-python; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-python.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-3.0.1\/build\/ngs-sdk\/FreeBSD\/clang\/amd64\/rel\/obj\/ngs-bind-python\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-python/manifest ) ( ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-c++.a.2.11.2 `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-c++/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-disp/manifest` ) clang++ -mmacosx-version-min=10.10 -DNDEBUG -O3 -shared -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-sdk.so.2.11.2 -install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib64/libngs-sdk.so.2 -compatibility_version 2.11 -current_version 2.11.2 -flat_namespace -undefined suppress `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-java/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/ngs-bind-python/manifest` -L/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib -lngs-disp rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-c++.a.2 ln -s libngs-c++.a.2.11.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-c++.a.2 rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-c++.a ln -s libngs-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-c++.a rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-c++-static.a ln -s libngs-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-c++-static.a clang++: warning: argument unused during compilation: '-install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib64/libngs-sdk.so.2' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-compatibility_version 2.11' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-current_version 2.11.2' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-flat_namespace' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-undefined suppress' [-Wunused-command-line-argument] rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-sdk.so.2 ln -s libngs-sdk.so.2.11.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-sdk.so.2 rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-sdk.so ln -s libngs-sdk.so.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-sdk.so gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for ngs-sdk-3.0.1 ===> Generating temporary packing list cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE ngs /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include /bin/rm -f -r /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include/ngs/win cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib /usr/bin/strip /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib/libngs-sdk.so.2.11.2 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-04T12:03:04+0000' 'PKG_NOTE_ports_top_git_hash=57a50b106b87' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=67dfb32b6e2b' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for ngs-sdk-3.0.1 ===> Building ngs-sdk-3.0.1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for ngs-sdk-3.0.1 build of biology/ngs-sdk | ngs-sdk-3.0.1 ended at Sun May 4 08:03:27 EDT 2025 build time: 00:00:24