=>> Building biology/atac-seq build started at Tue Dec 17 09:49:15 EST 2024 port directory: /usr/ports/biology/atac-seq package name: atac-seq-0.2.0 building for: FreeBSD 13amd64-weekly-desktop-job-02 13.3-RELEASE-p4 FreeBSD 13.3-RELEASE-p4 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 917 Feb 24 2024 /usr/ports/biology/atac-seq/Makefile Ports top last git commit: 2d3682b801b6 Ports top unclean checkout: yes Port dir last git commit: d9c7e0b18ad0 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1303001 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1303001 UNAME_v=FreeBSD 13.3-RELEASE-p4 UNAME_r=13.3-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/mnt/data/.m/13amd64-weekly-desktop/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/mnt/data/.m/13amd64-weekly-desktop/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13amd64-weekly-desktop SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/mnt/data/.m/13amd64-weekly-desktop/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/atac-seq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/atac-seq/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/atac-seq/work/.cache HOME=/wrkdirs/usr/ports/biology/atac-seq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/atac-seq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/atac-seq/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/atac-seq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/atac-seq/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/atac-seq/work/.cache HOME=/wrkdirs/usr/ports/biology/atac-seq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/atac-seq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/atac-seq/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/atac-seq" EXAMPLESDIR="share/examples/atac-seq" DATADIR="share/atac-seq" WWWDIR="www/atac-seq" ETCDIR="etc/atac-seq" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/atac-seq DOCSDIR=/usr/local/share/doc/atac-seq EXAMPLESDIR=/usr/local/share/examples/atac-seq WWWDIR=/usr/local/www/atac-seq ETCDIR=/usr/local/etc/atac-seq --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Work around some weirdness when fetching golang modules GO_TAGS+=netcgo # Speed things up a bit MAKE_JOBS_NUMBER=4 .if ${.CURDIR:M*/www/chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/www/ungoogled-chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/lang/rust*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/lang/gcc*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/www/iridium*} MAKE_JOBS_NUMBER=16 .endif .if ${.CURDIR:M*/devel/electron*} MAKE_JOBS_NUMBER=20 .endif .if ${.CURDIR:M*/databases/mongodb*} MAKE_JOBS_NUMBER=12 .endif .if ${.CURDIR:M*/devel/llvm*} MAKE_JOBS_NUMBER=16 .endif #### #### MAKE_JOBS_NUMBER?=4 # Alows us to build ports non-interactivly DISABLE_LICENSES=yes LICENSES_ACCEPTED+= DCC # Enable SNDIO on anything that supports it #OPTIONS_SET+=PULSEAUDIO OPTIONS_SET+=SNDIO # Yes we have MS Windows x11-fonts_webfonts_SET+=EXTRAFONTS CLEARTYPE # Desktop Specific Options sysutils_gksu_UNSET+=NAUTILUS x11-wm_compiz-fusion_UNSET+=EMERALD accessibility_redshift_SET+=GUI VIDMODE # These ports default to other audio servers, audio_espeak_UNSET+=PORTAUDIO www_qt5-webengine_UNSET+=ALSA www_qt6-webengine_UNSET+=ALSA audio_rhvoice_UNSET+=AO comms_morse_UNSET+=OSS audio_harp_UNSET+=OSS # Somehow these options are being set and result in ports being rebuilt needlessly becuase they are actually turned off audio_alsa-plugins_SET+=FFMPEG JACK PULSEAUDIO SAMPLERATE SPEEX #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> atac-seq-0.2.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [13amd64-weekly-desktop-job-02] Installing pkg-1.21.3... [13amd64-weekly-desktop-job-02] Extracting pkg-1.21.3: .......... done ===> atac-seq-0.2.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of atac-seq-0.2.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by atac-seq-0.2.0 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by atac-seq-0.2.0 for building =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Fetching all distfiles required by atac-seq-0.2.0 for building ===> Extracting for atac-seq-0.2.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for atac-seq-0.2.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> atac-seq-0.2.0 depends on file: /usr/local/bin/python3.11 - not found ===> Installing existing package /packages/All/python311-3.11.10.pkg [13amd64-weekly-desktop-job-02] Installing python311-3.11.10... [13amd64-weekly-desktop-job-02] `-- Installing gettext-runtime-0.22.5... [13amd64-weekly-desktop-job-02] | `-- Installing indexinfo-0.3.1... [13amd64-weekly-desktop-job-02] | `-- Extracting indexinfo-0.3.1: . done [13amd64-weekly-desktop-job-02] `-- Extracting gettext-runtime-0.22.5: .......... done [13amd64-weekly-desktop-job-02] `-- Installing libffi-3.4.6... [13amd64-weekly-desktop-job-02] `-- Extracting libffi-3.4.6: .......... done [13amd64-weekly-desktop-job-02] `-- Installing mpdecimal-4.0.0... [13amd64-weekly-desktop-job-02] `-- Extracting mpdecimal-4.0.0: .......... done [13amd64-weekly-desktop-job-02] `-- Installing readline-8.2.13_2... [13amd64-weekly-desktop-job-02] `-- Extracting readline-8.2.13_2: .......... done [13amd64-weekly-desktop-job-02] Extracting python311-3.11.10: .......... done ===== Message from python311-3.11.10: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> atac-seq-0.2.0 depends on file: /usr/local/bin/python3.11 - found ===> Returning to build of atac-seq-0.2.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for atac-seq-0.2.0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> atac-seq-0.2.0 depends on package: sra-tools>0 - not found ===> Installing existing package /packages/All/sra-tools-3.0.6.pkg [13amd64-weekly-desktop-job-02] Installing sra-tools-3.0.6... 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[13amd64-weekly-desktop-job-02] | `-- Extracting giflib-5.2.2: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing harfbuzz-10.0.1... [13amd64-weekly-desktop-job-02] | | `-- Installing glib-2.80.5,2... [13amd64-weekly-desktop-job-02] | | `-- Installing libiconv-1.17_1... [13amd64-weekly-desktop-job-02] | | `-- Extracting libiconv-1.17_1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing pcre2-10.43... [13amd64-weekly-desktop-job-02] | | `-- Extracting pcre2-10.43: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-packaging-24.1... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-packaging-24.1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting glib-2.80.5,2: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing graphite2-1.3.14... 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[13amd64-weekly-desktop-job-02] | | | `-- Extracting xorgproto-2024.1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting libXdmcp-1.1.5: ...... done [13amd64-weekly-desktop-job-02] | | `-- Extracting libxcb-1.17.0: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting libX11-1.8.9,1: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing libXext-1.3.6,1... [13amd64-weekly-desktop-job-02] | `-- Extracting libXext-1.3.6,1: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing libXi-1.8.1,1... [13amd64-weekly-desktop-job-02] | | `-- Installing libXfixes-6.0.1... [13amd64-weekly-desktop-job-02] | | `-- Extracting libXfixes-6.0.1: ....... done [13amd64-weekly-desktop-job-02] | `-- Extracting libXi-1.8.1,1: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing libXrandr-1.5.4... [13amd64-weekly-desktop-job-02] | | `-- Installing libXrender-0.9.11... 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[13amd64-weekly-desktop-job-02] | | | `-- Installing libfontenc-1.1.8... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libfontenc-1.1.8: ...... done [13amd64-weekly-desktop-job-02] | | `-- Extracting mkfontscale-1.2.3: .... done [13amd64-weekly-desktop-job-02] | | `-- Extracting dejavu-2.37_3: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing encodings-1.1.0,1... [13amd64-weekly-desktop-job-02] | | `-- Extracting encodings-1.1.0,1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing font-bh-ttf-1.0.3_5... [13amd64-weekly-desktop-job-02] | | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing font-misc-ethiopic-1.0.4... [13amd64-weekly-desktop-job-02] | | `-- Extracting font-misc-ethiopic-1.0.4: ... done [13amd64-weekly-desktop-job-02] | | `-- Installing font-misc-meltho-1.0.3_5... [13amd64-weekly-desktop-job-02] | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting openjdk17-17.0.12+7.1: .......... done [13amd64-weekly-desktop-job-02] Extracting sra-tools-3.0.6: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from gcc13-13.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from openjdk17-17.0.12+7.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> atac-seq-0.2.0 depends on package: sra-tools>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: fastq-trim>0 - not found ===> Installing existing package /packages/All/fastq-trim-0.1.3_1.pkg [13amd64-weekly-desktop-job-02] Installing fastq-trim-0.1.3_1... [13amd64-weekly-desktop-job-02] `-- Installing biolibc-0.2.6.4... [13amd64-weekly-desktop-job-02] | `-- Installing libxtend-0.2.0.2_1... [13amd64-weekly-desktop-job-02] | `-- Extracting libxtend-0.2.0.2_1: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting biolibc-0.2.6.4: .......... done [13amd64-weekly-desktop-job-02] Extracting fastq-trim-0.1.3_1: .......... done ===> atac-seq-0.2.0 depends on package: fastq-trim>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: fastqc>0 - not found ===> Installing existing package /packages/All/fastqc-0.12.1.pkg [13amd64-weekly-desktop-job-02] Installing fastqc-0.12.1... [13amd64-weekly-desktop-job-02] `-- Installing openjdk8-8.422.05.1_2... [13amd64-weekly-desktop-job-02] | `-- Installing java-zoneinfo-2021.e... [13amd64-weekly-desktop-job-02] | `-- Extracting java-zoneinfo-2021.e: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing libinotify-20240724... [13amd64-weekly-desktop-job-02] | `-- Extracting libinotify-20240724: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting openjdk8-8.422.05.1_2: .......... done [13amd64-weekly-desktop-job-02] `-- Installing perl5-5.36.3_2... [13amd64-weekly-desktop-job-02] `-- Extracting perl5-5.36.3_2: .......... done [13amd64-weekly-desktop-job-02] Extracting fastqc-0.12.1: .......... done ===== Message from libinotify-20240724: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from openjdk8-8.422.05.1_2: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> atac-seq-0.2.0 depends on package: fastqc>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: py311-multiqc>0 - not found ===> Installing existing package /packages/All/py311-multiqc-1.15_1.pkg [13amd64-weekly-desktop-job-02] Installing py311-multiqc-1.15_1... [13amd64-weekly-desktop-job-02] `-- Installing py311-Jinja2-3.1.4... [13amd64-weekly-desktop-job-02] | `-- Installing py311-Babel-2.16.0... [13amd64-weekly-desktop-job-02] | | `-- Installing py311-setuptools-63.1.0_1... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-setuptools-63.1.0_1: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting py311-Babel-2.16.0: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing py311-markupsafe-2.1.5_1... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-markupsafe-2.1.5_1: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting py311-Jinja2-3.1.4: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-coloredlogs-15.0.1_1... [13amd64-weekly-desktop-job-02] | `-- Installing py311-humanfriendly-10.0... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-humanfriendly-10.0: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting py311-coloredlogs-15.0.1_1: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-colormath-3.0.0_2... [13amd64-weekly-desktop-job-02] | `-- Installing py311-networkx-3.4,2... [13amd64-weekly-desktop-job-02] | | `-- Installing py311-gdal-3.9.2... [13amd64-weekly-desktop-job-02] | | `-- Installing gdal-3.9.2_2... [13amd64-weekly-desktop-job-02] | | | `-- Installing curl-8.10.1... [13amd64-weekly-desktop-job-02] | | | `-- Installing libnghttp2-1.63.0... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libnghttp2-1.63.0: ....... done [13amd64-weekly-desktop-job-02] | | | `-- Installing libpsl-0.21.5_1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing libidn2-2.3.7... [13amd64-weekly-desktop-job-02] | | | | `-- Installing libunistring-1.2... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting libunistring-1.2: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Extracting libidn2-2.3.7: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting libpsl-0.21.5_1: ........ done [13amd64-weekly-desktop-job-02] | | | `-- Installing libssh2-1.11.0_1,3... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libssh2-1.11.0_1,3: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting curl-8.10.1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing freexl-2.0.0... [13amd64-weekly-desktop-job-02] | | | `-- Installing minizip-1.3.1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting minizip-1.3.1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting freexl-2.0.0: ...... done [13amd64-weekly-desktop-job-02] | | | `-- Installing geos-3.13.0... [13amd64-weekly-desktop-job-02] | | | `-- Extracting geos-3.13.0: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing json-c-0.18... [13amd64-weekly-desktop-job-02] | | | `-- Extracting json-c-0.18: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing libgeotiff-1.7.3_1... [13amd64-weekly-desktop-job-02] | | | `-- Installing proj-9.4.1,1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing sqlite3-3.46.1,1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing libedit-3.1.20240808,1... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting libedit-3.1.20240808,1: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Extracting sqlite3-3.46.1,1: ......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting proj-9.4.1,1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting libgeotiff-1.7.3_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing libkml-1.3.0_27... [13amd64-weekly-desktop-job-02] | | | `-- Installing boost-libs-1.85.0... [13amd64-weekly-desktop-job-02] | | | | `-- Installing icu-74.2_1,1... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting icu-74.2_1,1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting boost-libs-1.85.0: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing uriparser-0.9.6... [13amd64-weekly-desktop-job-02] | | | `-- Extracting uriparser-0.9.6: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting libkml-1.3.0_27: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing netcdf-4.9.2_1... [13amd64-weekly-desktop-job-02] | | | `-- Installing pkgconf-2.3.0,1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting pkgconf-2.3.0,1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting netcdf-4.9.2_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing openjpeg-2.5.2_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting openjpeg-2.5.2_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing poppler-24.02.0_1... [13amd64-weekly-desktop-job-02] | | | `-- Installing cairo-1.17.4_2,3... [13amd64-weekly-desktop-job-02] | | | | `-- Installing libglvnd-1.7.0... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting libglvnd-1.7.0: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Installing pixman-0.42.2... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting pixman-0.42.2: ....... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting cairo-1.17.4_2,3: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing gpgme-cpp-1.23.2_1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing gpgme-1.23.2_1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing gnupg-2.4.5_1... [13amd64-weekly-desktop-job-02] | | | | | `-- Installing gnutls-3.8.7.1... [13amd64-weekly-desktop-job-02] | | | | | `-- Installing libtasn1-4.19.0_1... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting libtasn1-4.19.0_1: .......... done [13amd64-weekly-desktop-job-02] | | | | | `-- Installing nettle-3.10_1... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting nettle-3.10_1: .......... done [13amd64-weekly-desktop-job-02] | | | | | `-- Installing p11-kit-0.25.5... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting p11-kit-0.25.5: .......... done [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting gnutls-3.8.7.1: .......... done [13amd64-weekly-desktop-job-02] | | | | | `-- Installing libassuan-3.0.1... [13amd64-weekly-desktop-job-02] | | | | | `-- Installing libgpg-error-1.50... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting libgpg-error-1.50: .......... done [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting libassuan-3.0.1: ........ done [13amd64-weekly-desktop-job-02] | | | | | `-- Installing libgcrypt-1.11.0... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting libgcrypt-1.11.0: .......... done [13amd64-weekly-desktop-job-02] | | | | | `-- Installing libksba-1.6.7... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting libksba-1.6.7: ......... done [13amd64-weekly-desktop-job-02] | | | | | `-- Installing npth-1.7... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting npth-1.7: ...... done [13amd64-weekly-desktop-job-02] | | | | | `-- Installing pinentry-1.3.1... [13amd64-weekly-desktop-job-02] | | | | | `-- Installing pinentry-curses-1.3.1... [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting pinentry-curses-1.3.1: . done [13amd64-weekly-desktop-job-02] | | | | | `-- Extracting pinentry-1.3.1: .. done [13amd64-weekly-desktop-job-02] | | | | `-- Extracting gnupg-2.4.5_1: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Extracting gpgme-1.23.2_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting gpgme-cpp-1.23.2_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing nspr-4.35... [13amd64-weekly-desktop-job-02] | | | `-- Extracting nspr-4.35: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing nss-3.107_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting nss-3.107_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing poppler-data-0.4.12... [13amd64-weekly-desktop-job-02] | | | `-- Extracting poppler-data-0.4.12: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting poppler-24.02.0_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing postgresql16-client-16.4... [13amd64-weekly-desktop-job-02] | | | `-- Extracting postgresql16-client-16.4: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing qhull-8.0.2_3,1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting qhull-8.0.2_3,1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing sfcgal-2.0.0... [13amd64-weekly-desktop-job-02] | | | `-- Extracting sfcgal-2.0.0: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing spatialite-5.1.0_2... [13amd64-weekly-desktop-job-02] | | | `-- Installing librttopo-1.1.0... [13amd64-weekly-desktop-job-02] | | | `-- Extracting librttopo-1.1.0: ....... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting spatialite-5.1.0_2: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing webp-1.4.0_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting webp-1.4.0_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing xerces-c3-3.2.5... [13amd64-weekly-desktop-job-02] | | | `-- Extracting xerces-c3-3.2.5: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting gdal-3.9.2_2: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-gdal-3.9.2: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-lxml-4.9.3... [13amd64-weekly-desktop-job-02] | | `-- Installing libxslt-1.1.37_1... [13amd64-weekly-desktop-job-02] | | `-- Extracting libxslt-1.1.37_1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-lxml-4.9.3: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-matplotlib-3.8.0_1... [13amd64-weekly-desktop-job-02] | | `-- Installing py311-certifi-2024.8.30_2... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-certifi-2024.8.30_2: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-contourpy-1.3.0... [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-numpy-1.26.4_2,1... [13amd64-weekly-desktop-job-02] | | | `-- Installing openblas-0.3.27,2... [13amd64-weekly-desktop-job-02] | | | `-- Extracting openblas-0.3.27,2: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing suitesparse-umfpack-6.3.3_1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing suitesparse-amd-3.3.2... [13amd64-weekly-desktop-job-02] | | | | `-- Installing suitesparse-config-7.7.0_1... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting suitesparse-config-7.7.0_1: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Extracting suitesparse-amd-3.3.2: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Installing suitesparse-camd-3.3.2... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting suitesparse-camd-3.3.2: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Installing suitesparse-ccolamd-3.3.3... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting suitesparse-ccolamd-3.3.3: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Installing suitesparse-cholmod-5.2.1_1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing suitesparse-colamd-3.3.3... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting suitesparse-colamd-3.3.3: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Extracting suitesparse-cholmod-5.2.1_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting suitesparse-umfpack-6.3.3_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-numpy-1.26.4_2,1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-contourpy-1.3.0: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-cycler-0.12.1... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-cycler-0.12.1: ......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-fonttools-4.51.0... [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-brotli-1.1.0... [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-brotli-1.1.0: ......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-fs2-2.4.16... [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-appdirs-1.4.4_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-appdirs-1.4.4_1: ........ done [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-pytz-2024.2,1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-pytz-2024.2,1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-six-1.16.0_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-six-1.16.0_1: ........ done [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-fs2-2.4.16: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-unicodedata2-15.1.0_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-unicodedata2-15.1.0_1: ...... done [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-zopfli-0.2.3... [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-zopfli-0.2.3: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-fonttools-4.51.0: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-importlib-resources-6.4.5... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-importlib-resources-6.4.5: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-kiwisolver-1.4.5,1... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-kiwisolver-1.4.5,1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-pillow-10.4.0... [13amd64-weekly-desktop-job-02] | | | `-- Installing libimagequant-4.3.3_2... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libimagequant-4.3.3_2: ...... done [13amd64-weekly-desktop-job-02] | | | `-- Installing libraqm-0.10.2... [13amd64-weekly-desktop-job-02] | | | `-- Installing fribidi-1.0.15... [13amd64-weekly-desktop-job-02] | | | `-- Extracting fribidi-1.0.15: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting libraqm-0.10.2: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-olefile-0.46... [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-olefile-0.46: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing py311-tkinter-3.11.10_7... [13amd64-weekly-desktop-job-02] | | | `-- Installing tcl86-8.6.15_2... [13amd64-weekly-desktop-job-02] | | | `-- Extracting tcl86-8.6.15_2: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing tk86-8.6.15... [13amd64-weekly-desktop-job-02] | | | | `-- Installing libXScrnSaver-1.2.4_1... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [13amd64-weekly-desktop-job-02] | | | | `-- Installing libXft-2.3.8... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting libXft-2.3.8: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting tk86-8.6.15: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting py311-tkinter-3.11.10_7: ..... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-pillow-10.4.0: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-pluggy-1.5.0... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-pluggy-1.5.0: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-pyparsing-3.1.4... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-pyparsing-3.1.4: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-python-dateutil-2.9.0... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-python-dateutil-2.9.0: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-tornado-6.4... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-tornado-6.4: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-matplotlib-3.8.0_1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-pandas-2.0.3_2,1... [13amd64-weekly-desktop-job-02] | | `-- Installing py311-bottleneck-1.3.8_1... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-bottleneck-1.3.8_1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-numexpr-2.10.1... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-numexpr-2.10.1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-sqlite3-3.11.10_7... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-sqlite3-3.11.10_7: ..... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-tzdata-2024.2... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-tzdata-2024.2: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-pandas-2.0.3_2,1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-pydot-3.0.2... [13amd64-weekly-desktop-job-02] | | `-- Installing graphviz-12.0.0... [13amd64-weekly-desktop-job-02] | | | `-- Installing libXaw-1.0.16,2... [13amd64-weekly-desktop-job-02] | | | `-- Installing libXmu-1.1.4,1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libXmu-1.1.4,1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing libXpm-3.5.17_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libXpm-3.5.17_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting libXaw-1.0.16,2: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing libgd-2.3.3_13,1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libgd-2.3.3_13,1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing libltdl-2.4.7... [13amd64-weekly-desktop-job-02] | | | `-- Extracting libltdl-2.4.7: ......... done [13amd64-weekly-desktop-job-02] | | | `-- Installing pango-1.52.2_1... [13amd64-weekly-desktop-job-02] | | | `-- Installing libthai-0.1.29_1... [13amd64-weekly-desktop-job-02] | | | | `-- Installing libdatrie-0.2.13_2... [13amd64-weekly-desktop-job-02] | | | | `-- Extracting libdatrie-0.2.13_2: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting libthai-0.1.29_1: .......... done [13amd64-weekly-desktop-job-02] | | | `-- Extracting pango-1.52.2_1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting graphviz-12.0.0: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-pydot-3.0.2: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-pygraphviz-1.6... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-pygraphviz-1.6: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-pyyaml-6.0.1... [13amd64-weekly-desktop-job-02] | | `-- Installing libyaml-0.2.5... [13amd64-weekly-desktop-job-02] | | `-- Extracting libyaml-0.2.5: ...... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-pyyaml-6.0.1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-scikit-sparse-0.4.8_9... [13amd64-weekly-desktop-job-02] | | `-- Installing py311-scipy-1.11.1_1,1... [13amd64-weekly-desktop-job-02] | | | `-- Installing blas-3.12.0_1... [13amd64-weekly-desktop-job-02] | | | `-- Extracting blas-3.12.0_1: ..... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-scipy-1.11.1_1,1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-scikit-sparse-0.4.8_9: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting py311-networkx-3.4,2: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting py311-colormath-3.0.0_2: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-future-0.18.3... [13amd64-weekly-desktop-job-02] `-- Extracting py311-future-0.18.3: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-lzstring-1.0.4... [13amd64-weekly-desktop-job-02] `-- Extracting py311-lzstring-1.0.4: ........ done [13amd64-weekly-desktop-job-02] `-- Installing py311-markdown-3.6... [13amd64-weekly-desktop-job-02] `-- Extracting py311-markdown-3.6: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-requests-2.32.3... [13amd64-weekly-desktop-job-02] | `-- Installing py311-charset-normalizer-3.3.2_1... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-charset-normalizer-3.3.2_1: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing py311-idna-3.10... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-idna-3.10: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing py311-pysocks-1.7.1_1... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-pysocks-1.7.1_1: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing py311-urllib3-1.26.20,1... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-urllib3-1.26.20,1: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting py311-requests-2.32.3: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-rich-13.9.2... [13amd64-weekly-desktop-job-02] | `-- Installing py311-markdown-it-py-3.0.0... [13amd64-weekly-desktop-job-02] | | `-- Installing py311-mdurl-0.1.2_2... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-mdurl-0.1.2_2: .......... done [13amd64-weekly-desktop-job-02] | `-- Extracting py311-markdown-it-py-3.0.0: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing py311-pygments-2.18.0... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-pygments-2.18.0: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting py311-rich-13.9.2: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-rich-click-1.6.1... [13amd64-weekly-desktop-job-02] | `-- Installing py311-click-8.1.7... [13amd64-weekly-desktop-job-02] | `-- Extracting py311-click-8.1.7: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting py311-rich-click-1.6.1: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-simplejson-3.18.4_1... [13amd64-weekly-desktop-job-02] `-- Extracting py311-simplejson-3.18.4_1: .......... done [13amd64-weekly-desktop-job-02] `-- Installing py311-spectra-0.0.11... [13amd64-weekly-desktop-job-02] `-- Extracting py311-spectra-0.0.11: .......... done [13amd64-weekly-desktop-job-02] Extracting py311-multiqc-1.15_1: .......... done ===== Message from boost-libs-1.85.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from postgresql16-client-16.4: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===== Message from py311-pandas-2.0.3_2,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===== Message from py311-urllib3-1.26.20,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> atac-seq-0.2.0 depends on package: py311-multiqc>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: biolibc-tools>0 - not found ===> Installing existing package /packages/All/biolibc-tools-0.1.4.13_1.pkg [13amd64-weekly-desktop-job-02] Installing biolibc-tools-0.1.4.13_1... [13amd64-weekly-desktop-job-02] `-- Installing xxhash-0.8.2_1... [13amd64-weekly-desktop-job-02] `-- Extracting xxhash-0.8.2_1: .......... done [13amd64-weekly-desktop-job-02] Extracting biolibc-tools-0.1.4.13_1: .......... done ===> atac-seq-0.2.0 depends on package: biolibc-tools>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: bwa>0 - not found ===> Installing existing package /packages/All/bwa-0.7.17_2.pkg [13amd64-weekly-desktop-job-02] Installing bwa-0.7.17_2... [13amd64-weekly-desktop-job-02] Extracting bwa-0.7.17_2: .... done ===> atac-seq-0.2.0 depends on package: bwa>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: bowtie2>0 - not found ===> Installing existing package /packages/All/bowtie2-2.5.4.pkg [13amd64-weekly-desktop-job-02] Installing bowtie2-2.5.4... [13amd64-weekly-desktop-job-02] `-- Installing bash-5.2.37... [13amd64-weekly-desktop-job-02] `-- Extracting bash-5.2.37: .......... done [13amd64-weekly-desktop-job-02] Extracting bowtie2-2.5.4: .......... done ===> atac-seq-0.2.0 depends on package: bowtie2>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: samtools>0 - not found ===> Installing existing package /packages/All/samtools-1.21.pkg [13amd64-weekly-desktop-job-02] Installing samtools-1.21... [13amd64-weekly-desktop-job-02] `-- Installing htslib-1.21... [13amd64-weekly-desktop-job-02] `-- Extracting htslib-1.21: .......... done [13amd64-weekly-desktop-job-02] Extracting samtools-1.21: .......... done ===> atac-seq-0.2.0 depends on package: samtools>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: py311-macs2>0 - not found ===> Installing existing package /packages/All/py311-macs2-2.2.9.1.pkg [13amd64-weekly-desktop-job-02] Installing py311-macs2-2.2.9.1... [13amd64-weekly-desktop-job-02] `-- Installing py311-cykhash-2.0.1... [13amd64-weekly-desktop-job-02] `-- Extracting py311-cykhash-2.0.1: .......... done [13amd64-weekly-desktop-job-02] Extracting py311-macs2-2.2.9.1: .......... done ===> atac-seq-0.2.0 depends on package: py311-macs2>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: fasda>0 - not found ===> Installing existing package /packages/All/fasda-0.1.5_1.pkg [13amd64-weekly-desktop-job-02] Installing fasda-0.1.5_1... [13amd64-weekly-desktop-job-02] `-- Installing stringtie-2.1.1... [13amd64-weekly-desktop-job-02] `-- Extracting stringtie-2.1.1: . done [13amd64-weekly-desktop-job-02] Extracting fasda-0.1.5_1: .......... done ===> atac-seq-0.2.0 depends on package: fasda>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: peak-classifier>0 - not found ===> Installing existing package /packages/All/peak-classifier-0.1.4.13_1.pkg [13amd64-weekly-desktop-job-02] Installing peak-classifier-0.1.4.13_1... [13amd64-weekly-desktop-job-02] `-- Installing bedtools-2.31.1... [13amd64-weekly-desktop-job-02] `-- Extracting bedtools-2.31.1: .......... done [13amd64-weekly-desktop-job-02] Extracting peak-classifier-0.1.4.13_1: ......... done ===> atac-seq-0.2.0 depends on package: peak-classifier>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: webbrowser>0 - not found ===> Installing existing package /packages/All/webbrowser-0.3_1.pkg [13amd64-weekly-desktop-job-02] Installing webbrowser-0.3_1... [13amd64-weekly-desktop-job-02] Extracting webbrowser-0.3_1: .. done ===> atac-seq-0.2.0 depends on package: webbrowser>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on package: curl>0 - found ===> atac-seq-0.2.0 depends on package: py311-MACS3>0 - not found ===> Installing existing package /packages/All/py311-MACS3-3.0.2.pkg [13amd64-weekly-desktop-job-02] Installing py311-MACS3-3.0.2... [13amd64-weekly-desktop-job-02] `-- Installing py311-hmmlearn-0.3.2... [13amd64-weekly-desktop-job-02] | `-- Installing py311-scikit-learn-1.4.0... [13amd64-weekly-desktop-job-02] | | `-- Installing py311-joblib-1.3.2_1... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-joblib-1.3.2_1: .......... done [13amd64-weekly-desktop-job-02] | | `-- Installing py311-threadpoolctl-3.5.0... [13amd64-weekly-desktop-job-02] | | `-- Extracting py311-threadpoolctl-3.5.0: ....... done [13amd64-weekly-desktop-job-02] | `-- Extracting py311-scikit-learn-1.4.0: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting py311-hmmlearn-0.3.2: .......... done [13amd64-weekly-desktop-job-02] Extracting py311-MACS3-3.0.2: .......... done ===> atac-seq-0.2.0 depends on package: py311-MACS3>0 - found ===> Returning to build of atac-seq-0.2.0 ===> atac-seq-0.2.0 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for atac-seq-0.2.0 ===> Generating temporary packing list ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-12-17T14:49:15+0000' 'PKG_NOTE_ports_top_git_hash=2d3682b801b6' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=d9c7e0b18ad0' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for atac-seq-0.2.0 ===> Building atac-seq-0.2.0 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for atac-seq-0.2.0 build of biology/atac-seq | atac-seq-0.2.0 ended at Tue Dec 17 09:51:06 EST 2024 build time: 00:01:51